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[ Source: pairtools  ]

Package: python3-pairtools-examples (1.1.3-2 and others)

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Process sequencing data from a Hi-C experiment (examples)

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations: 

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

This package contains some examples

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Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.1.3-2 943.0 kB997.0 kB [list of files]
amd64 1.1.3-2+b1 943.3 kB998.0 kB [list of files]
arm64 1.1.3-2+b1 943.3 kB998.0 kB [list of files]
hppa (unofficial port) 0.3.0-3.2+b2 12.1 kB50.0 kB [list of files]
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