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Add db components from ispyb for processing outputs#706

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stephen-riggs wants to merge 38 commits intomainfrom
processing-db
Open

Add db components from ispyb for processing outputs#706
stephen-riggs wants to merge 38 commits intomainfrom
processing-db

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@stephen-riggs
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@stephen-riggs stephen-riggs commented Dec 1, 2025

Adds some parts from ispyb into the murfey database. Requires extending some tables such as DataCollectionGroup and adding all the EM-specific tables from ispyb (e.g. CTF)

To consider:

  • How to set up murfey with/without processing DB
  • Ways to insert processing results
  • GridSquare, FoilHole, Movie tables are duplicate names
  • Do we want cascade delete on tables?

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codecov bot commented Jan 7, 2026

Codecov Report

❌ Patch coverage is 91.88034% with 19 lines in your changes missing coverage. Please review.
✅ Project coverage is 47.91%. Comparing base (70d5cdb) to head (c3a3e18).

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #706      +/-   ##
==========================================
+ Coverage   46.85%   47.91%   +1.06%     
==========================================
  Files          91       92       +1     
  Lines        9692     9922     +230     
  Branches     1278     1280       +2     
==========================================
+ Hits         4541     4754     +213     
- Misses       4929     4946      +17     
  Partials      222      222              
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@stephen-riggs stephen-riggs marked this pull request as ready for review February 20, 2026 15:56
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