To test: trigger the run testsuite manual workflow with:

• use workflow from: dumuxsystemtest (not needed yet, maybe if you change the workflows)
• test suite dumux_test
• no arguments
• branch to take the system tests from: dumuxsystemtest
• logging: DEBUG

I got further in the debugging and now see the error:

#21 0.167 Cloning into 'dumux-adapter'...
#21 0.678 error: pathspec 'main' did not match any file(s) known to git
#21 ERROR: process "/bin/bash -c git clone --depth 1 https://github.com/precice/dumux-adapter.git &&    cd dumux-adapter &&     if [ -n \"${DUMUX_ADAPTER_PR}\" ]; then git fetch origin pull/${DUMUX_ADAPTER_PR}/head; fi &&     git checkout ${DUMUX_ADAPTER_REF} &&     cd .. &&    dunecontrol --opts=cmake-test.opts --only=dumux-adapter all" did not complete successfully: exit code: 1
------
 > [micro-dumux dumux_adapter 6/6] RUN git clone --depth 1 https://github.com/precice/dumux-adapter.git &&    cd dumux-adapter &&     if [ -n "${DUMUX_ADAPTER_PR}" ]; then git fetch origin pull/${DUMUX_ADAPTER_PR}/head; fi &&     git checkout main &&     cd .. &&    dunecontrol --opts=cmake-test.opts --only=dumux-adapter all:
0.167 Cloning into 'dumux-adapter'...
0.678 error: pathspec 'main' did not match any file(s) known to git
------

It seems like git checkout main for the dumux-adapter did not work, although the main branch does exist.

You are pulling with --depth 1, asking for the branch main, but the default branch is develop. There is no need for --depth 1 in this case: you want to change to other references, for which you need the full repository.

With the last manual run of the test suite dumux_test, it takes about 6min51s to build the docker image(at least the DuMux part is newly built) and run the case. Next step would be to generate the reference solution.

The manual run before the change to the docker file failed for timeout. Possible reasons are: two times complete compilation of DUNE modules took double the time, or one of this compilations failed build of the adapter, as I built and tested locally to find that the solver can't find the adapter among the other DUNE modules.

Tried to build dumux locally on my machine:
Var1: cmake + make = 2:47 + 3:43
Var2: cmake + make in parallel = 3:00 + 2:00
Var3: cmake -G Ninja + make in parallel = 2:38 + 1:49

Thinks it's safer to increase the GLOBAL_TIMEOUT since the compilation of the cases as DUNE modules also takes some time

Is there anything blocking this PR? It would be nice to have this merged, as several developments in the DuMuX adapter and the Micro Manager are ongoing, and it would be beneficial to run the system test periodically.

Is there anything blocking this PR? It would be nice to have this merged, as several developments in the DuMuX adapter and the Micro Manager are ongoing, and it would be beneficial to run the system test periodically.

@IshaanDesai I thought there was still work going on here. I don't see anything else open right now.

Too fast: We still need reference results. I can do that in a follow-up PR.

The system tests now fail earlier. I understood this was already fixed, no?

https://github.com/precice/tutorials/actions/runs/22549811465

-- Setting dumux_INCLUDE_DIRS=/home/precice/dumux/dumux
-- Setting dumux_LIBRARIES=dumux;dumux_fmt
-- Setting dumux-phasefield_INCLUDE_DIRS=/home/precice/dumux/dumux-phasefield
WARNING: Package(s) not found: pybind11
CMake Error at appl/CMakeLists.txt:8 (find_package):
  Could not find a package configuration file provided by "pybind11" with any
  of the following names:

    pybind11Config.cmake
    pybind11-config.cmake

  Add the installation prefix of "pybind11" to CMAKE_PREFIX_PATH or set
  "pybind11_DIR" to a directory containing one of the above files.  If
  "pybind11" provides a separate development package or SDK, be sure it has
  been installed.


-- Configuring incomplete, errors occurred!
--- Failed to build micro_sim ---
Terminating dunecontrol due to previous errors!

system-tests_micro-dumux.log